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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 489 240

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 75 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated Feb 6, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 0 0 0 Updated Feb 5, 2025
  • discourse-unhandled-tagger Public Forked from discourse/discourse-unhandled-tagger

    Simple plugin that tags topics automatically if non-staff replies

    qiime2/discourse-unhandled-tagger’s past year of commit activity
    Ruby 0 MIT 8 0 1 Updated Feb 5, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 3 2 Updated Feb 5, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 1 Updated Feb 4, 2025
  • qiime2 Public

    Official repository for the QIIME 2 framework.

    qiime2/qiime2’s past year of commit activity
    Python 489 BSD-3-Clause 240 63 (5 issues need help) 8 Updated Feb 4, 2025
  • library-plugins Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-plugins’s past year of commit activity
    0 BSD-3-Clause 5 0 1 Updated Feb 3, 2025
  • q2-quality-filter Public

    Quality filtering for QIIME2

    qiime2/q2-quality-filter’s past year of commit activity
    Python 1 BSD-3-Clause 16 3 0 Updated Jan 29, 2025
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 39 24 (2 issues need help) 1 Updated Jan 24, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 22 9 2 Updated Jan 23, 2025

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