Skip to content

Commit

Permalink
Upload documentation from latest commit
Browse files Browse the repository at this point in the history
  • Loading branch information
actions-user committed Jan 8, 2024
1 parent 54ac6d2 commit e6f40dd
Show file tree
Hide file tree
Showing 43 changed files with 306 additions and 265 deletions.
13 changes: 7 additions & 6 deletions _modules/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=89af775e" />
<script src="../_static/jquery.js?v=5d32c60e"></script>
<script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../_static/doctools.js?v=888ff710"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -104,11 +105,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
13 changes: 7 additions & 6 deletions _modules/laue_dials/algorithms/diffgeo.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.algorithms.diffgeo &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -327,11 +328,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
13 changes: 7 additions & 6 deletions _modules/laue_dials/algorithms/integration.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.algorithms.integration &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -472,11 +473,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
18 changes: 10 additions & 8 deletions _modules/laue_dials/algorithms/laue.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.algorithms.laue &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -128,8 +129,9 @@ <h1>Source code for laue_dials.algorithms.laue</h1><div class="highlight"><pre>
<span class="c1"># Imports</span>
<span class="kn">from</span> <span class="nn">copy</span> <span class="kn">import</span> <span class="n">deepcopy</span>

<span class="kn">from</span> <span class="nn">dials.algorithms.refinement.prediction.managed_predictors</span> <span class="kn">import</span> \
<span class="n">ExperimentsPredictorFactory</span>
<span class="kn">from</span> <span class="nn">dials.algorithms.refinement.prediction.managed_predictors</span> <span class="kn">import</span> <span class="p">(</span>
<span class="n">ExperimentsPredictorFactory</span><span class="p">,</span>
<span class="p">)</span>

<span class="c1"># Instantiate new ExperimentList/reflection_table</span>
<span class="n">new_expts</span> <span class="o">=</span> <span class="n">ExperimentList</span><span class="p">()</span>
Expand Down Expand Up @@ -594,11 +596,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
13 changes: 7 additions & 6 deletions _modules/laue_dials/algorithms/monochromatic.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.algorithms.monochromatic &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -158,11 +159,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
13 changes: 7 additions & 6 deletions _modules/laue_dials/algorithms/outliers.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.algorithms.outliers &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -136,11 +137,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
17 changes: 9 additions & 8 deletions _modules/laue_dials/command_line/compute_rmsds.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.command_line.compute_rmsds &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -47,8 +48,7 @@ <h1>Source code for laue_dials.command_line.compute_rmsds</h1><div class="highli
<span class="kn">import</span> <span class="nn">reciprocalspaceship</span> <span class="k">as</span> <span class="nn">rs</span>
<span class="kn">from</span> <span class="nn">cctbx</span> <span class="kn">import</span> <span class="n">sgtbx</span>
<span class="kn">from</span> <span class="nn">dials.util</span> <span class="kn">import</span> <span class="n">show_mail_handle_errors</span>
<span class="kn">from</span> <span class="nn">dials.util.options</span> <span class="kn">import</span> <span class="p">(</span><span class="n">ArgumentParser</span><span class="p">,</span>
<span class="n">reflections_and_experiments_from_files</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">dials.util.options</span> <span class="kn">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">reflections_and_experiments_from_files</span>
<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">pyplot</span> <span class="k">as</span> <span class="n">plt</span>

<span class="kn">from</span> <span class="nn">laue_dials.utils.version</span> <span class="kn">import</span> <span class="n">laue_version</span>
Expand Down Expand Up @@ -215,6 +215,7 @@ <h1>Source code for laue_dials.command_line.compute_rmsds</h1><div class="highli

<span class="n">resid_data</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span><span class="s2">&quot;Image&quot;</span><span class="p">:</span> <span class="n">images</span><span class="p">,</span> <span class="s2">&quot;RMSD (px)&quot;</span><span class="p">:</span> <span class="n">rmsds</span><span class="p">})</span>

<span class="n">pd</span><span class="o">.</span><span class="n">set_option</span><span class="p">(</span><span class="s2">&quot;display.max_rows&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
<span class="n">logger</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;RMSDs per image: </span><span class="se">\n</span><span class="si">{</span><span class="n">resid_data</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>

<span class="c1"># Get pixel size (assume square)</span>
Expand Down Expand Up @@ -296,11 +297,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
13 changes: 7 additions & 6 deletions _modules/laue_dials/command_line/find_spots.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>laue_dials.command_line.find_spots &#8212; laue-dials</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=233b9934" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=89af775e" />
<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=5a5de0fe"></script>
<script src="../../../_static/documentation_options.js?v=a8b37f74"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="icon" href="../../../_static/rs-favicon_32x32.png"/>
Expand All @@ -18,8 +18,9 @@

<link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />




<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />

</head><body>

Expand Down Expand Up @@ -247,11 +248,11 @@ <h3 id="searchlabel">Quick search</h3>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;2023, PrinceWalnut.
&#169;2023, PrinceWalnut.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.2.6</a>
&amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.15</a>

</div>

Expand Down
Loading

0 comments on commit e6f40dd

Please sign in to comment.