Paintera Convert paintera-conversion-helper-1.2.0

Features

• Better support for various N5 backend and storage formats (N5, Zarr over google-cloud,s3, etc)
• version bumps to N5-spark and label-utilities-spark

🐛 Bug Fixes

• Be more lenient with the default client configuration for N5Factory

⚡ Performance

• Cache imgs/n5readers/n5writers per JVM where possible

💼 Other

• Build against JVM 17

Paintera Convert 1.1.0

🚀 Features

• default zarr output container dimension separator to "/"
• Update spark-master default (local[N] with N <= 24)

🚜 Refactor

• Move global param help to to-paintera

⚙️ Miscellaneous Tasks

• Improve help docs

Paintera Convert 1.0.2

What's Changed

• Fix/1.0.2 by @cmhulbert in #54

Full Changelog: paintera-conversion-helper-1.0.1...paintera-conversion-helper-1.0.2

Paintera Convert 1.0.1

🐛 Bug Fixes

• Dependency bumps and whitespace split on multiple parameter args

Paintera Convert 1.0.0

🚀 Features

• Build with JDK 21
• Support zarr
• Use N5URI

🐛 Bug Fixes

• Symlink instead of script for cli tool
• Revert -> reverse

📚 Documentation

• Update README

🎨 Styling

• Formatting

⚙️ Miscellaneous Tasks

• Add logback config
• Minor improvements
• Cleanup code
• Version bump, log in final application

POM

• Fix forum.image.sc tag link

Build

• Version bumps, use jdk21, replace fatjar with installer
• Generate installers

Paintera conversion helper 0.10.0

Changelog

• Use relative paths to N5 container in label-to-block mapping when converting label multiset datasets.
• Allow to use existing s0 dataset as raw data input to skip conversion and only generate scale levels
• Removed deprecated paintera-conversion-helper command in favor of newer paintera-convert

Bug fixes

• Fix meshes not showing up in converted label datasets on Windows after converting on Janelia cluster #45
• Fix NullPointerException in Gson adapter initialization when running conversion on Janelia cluster #40
• Fix duplicate group name /data/data/ instead of just /data/ in label multiset converter

paintera-conversion-helper-0.9.2

paintera-conversion-helper 0.9.2

Previous release: 0.9.1

Changelog

Bug Fixes

• It is not possible to convert a dataset into a Paintera dataset at the same container. Fix this by allowing the same container for input and output if the input dataset and output group are not the same. (#37)

paintera-conversion-helper-0.9.1

Previous release: 0.9.0

Changelog

Bug Fixes

• Make --help message more concise

paintera-conversion-helper-0.9.0

paintera-conversion-helper 0.9.0

Previous release: 0.8.1

Changelog

New Features

• Add new entry point PainteraConvert with improved synopsis and subcommands instead of multiple entry points (#33). Deprecate CommandLineConverter and ExtractHighestResolutionLabelDataset entry points.

paintera-conversion-helper-0.8.1

Default to n5 backend for label-block-lookup by default.