Merge pull request #177 from ravwojdyla/rav-add-cd-workflow #40

	name: CI

	on:
	pull_request:
	push:
	branches:
	- main

	jobs:
	pre-commit:
	name: Lint
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- uses: pre-commit/action@v3.0.1
	test:
	name: Test
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	# Use macos-13 because pip binary packages for ARM aren't
	# available for many dependencies
	os: [macos-13, ubuntu-latest]
	python-version: ["3.9", "3.10", "3.11"]
	exclude:
	# Just run macos tests on one Python version
	- os: macos-13
	python-version: "3.9"
	- os: macos-13
	python-version: "3.10"
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install '.[dev]'
	- run: pytest

	packaging:
	name: Packaging
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install build twine validate-pyproject[all]
	- name: Check and install package
	run: \|
	validate-pyproject pyproject.toml
	python -m build
	python -m twine check --strict dist/*
	python -m pip install dist/*.whl
	- name: Check vcf2zarr CLI
	run: \|
	vcf2zarr --help
	python -m bio2zarr vcf2zarr --help
	- name: Check vcfpartition CLI
	run: \|
	vcfpartition --help
	python -m bio2zarr vcfpartition --help

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