Code

Local alleles#266

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jeromekelleher merged 13 commits intosgkit-dev:mainsgkit-dev/bio2zarr:mainfrom Will-Tyler:local-allelesWill-Tyler/bio2zarr:local-allelesCopy head branch name to clipboardJul 10, 2024

+283-8

Commits

Commits on Jul 10, 2024

• Add LAA field during explode step

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  9b16253

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• Add local-alleles option to CLI

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  1407127

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• Ensure that LAA always has a three-dimensional shape

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• Add more unit tests

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  3442e4d

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• Use NumPy API to compute LAA

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  e4ae307

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• Only compute LAA if not present

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• Only add LAA if PL is present

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  8951cab

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• Simplify can_localize logic

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  0910e23

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• Simplify compute_laa_field

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  44affc0

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• Use boolean flag in CLI option

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  c5860be

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• Add triploid unit test

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  74b72bc

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• Add compute_laa_field description

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  d222466

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• Fix test_du

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