EFO/DO december 2022 release

sigven · Dec 19, 2022 · daffa93 · daffa93
1 parent 488eb63
commit daffa93
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: phenOncoX
 Type: Package
 Title: A phenotype ontology map for cancer
-Date: 2022-12-13
+Date: 2022-12-19
 Version: 0.5.4
 Authors@R: 
     c(person(given = "Sigve",

diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/README.md b/README.md
@@ -43,8 +43,8 @@ with phenotype terms from [EFO](https://github.com/EBISPOT/efo),
 As of December 2022, the following ontology versions are used to create the mapping:
 
 -   OncoTree (2021_11_02)
--   Experimental Factor Ontology v3.48.0 (2022-11-15)
--   Disease Ontology (v2022-11-30)
+-   Experimental Factor Ontology v3.49.0 (2022-12-15)
+-   Disease Ontology (v2022-12-15)
 
 **IMPORTANT NOTE**: The mapping established by **phenOncoX** attempts 
 to be comprehensive, but we acknowledge that the presence of missing or 

diff --git a/data-raw/data-raw.R b/data-raw/data-raw.R
@@ -73,7 +73,7 @@ db[['oncotree_core']] <- oncotree_core
 db[['oncotree_expanded']] <- oncotree_expanded
 db[['auxiliary_maps']] <- auxiliary_maps
 
-version_bumped <- "0.5.4"
+version_bumped <- "0.5.5"
 gd_records <- list()
 db_id_ref <- data.frame()
 

diff --git a/data-raw/metadata.xlsx b/data-raw/metadata.xlsx
diff --git a/pkgdown/index.md b/pkgdown/index.md
@@ -43,8 +43,8 @@ with phenotype terms from [EFO](https://github.com/EBISPOT/efo),
 As of December 2022, the following ontology versions are used to create the mapping:
 
 -   OncoTree (2021_11_02)
--   Experimental Factor Ontology v3.48.0 (2022-11-15)
--   Disease Ontology (v2022-11-30)
+-   Experimental Factor Ontology v3.49.0 (2022-12-15)
+-   Disease Ontology (v2022-12-15)
 
 
 The package offers a few pre-processed datasets, along with metadata, that