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Welcome to the towbintools_pipeline wiki!

This is essentially a tool to build personalized image analysis pipeline using a SLURM cluster. All it does, is chain together the right functions, and submit them to the cluster using the arguments you profide in a configuration file. It is a way of centralizing and standardizing job submissions so you can save time on the boilerplate and focus on your research.

This tool works by using building blocks, each block will then itself use a piece of the big configuration file as its configuration.

If you ever encounter a problem while running the pipeline, please take a look at the common problems page ! I will update it with every issue that I see reoccuring often.