cleaned up Makefile and added Changelog. Fixed decode.

stschiff · Dec 5, 2022 · e255076 · e255076
1 parent 8a00b44
commit e255076
Show file tree

Hide file tree

Showing 4 changed files with 4 additions and 58 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -0,0 +1 @@
+v1.1.1: Fixed compiler deprecation and error messages. Also cleaned up the Makefile.
diff --git a/Makefile b/Makefile
@@ -2,6 +2,8 @@
 # GSL = /usr/lib/libgsl.a /usr/lib/libgslcblas.a
 GSL=/usr/local/lib/libgsl.a /usr/local/lib/libgslcblas.a
 
+all: build/msmc build/decode
+
 build/msmc : model/*.d powell.d brent.d maximization_step.d expectation_step.d msmc.d branchlength.d logger.d
 	dmd -debug -O ${GSL} -odbuild -ofbuild/msmc $^
 
@@ -14,9 +16,6 @@ build/test/msmc : model/*.d powell.d brent.d maximization_step.d expectation_ste
 build/decode : model/*.d decode.d branchlength.d
 	dmd ${GSL} -odbuild -ofbuild/decode $^
 
-build/decodeStates : model/*.d decodeStates.d branchlength.d
-	dmd ${GSL} -odbuild -ofbuild/decodeStates $^
-
 .PHONY : unittest testcoverage clean
 
 testcoverage : model/*.d unittest.d powell.d brent.d maximization_step.d expectation_step.d amoeba.d logger.d

diff --git a/decode.d b/decode.d
@@ -20,7 +20,7 @@
 import std.stdio;
 import std.getopt;
 import std.exception;
-import std.c.stdlib;
+import core.stdc.stdlib;
 import std.algorithm;
 import std.parallelism;
 import std.range;

diff --git a/maximize.d b/maximize.d
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		v1.1.1: Fixed compiler deprecation and error messages. Also cleaned up the Makefile.