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stschiff committed Nov 8, 2023
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1 change: 1 addition & 0 deletions Changelog.md
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# Changelog

- V 1.5.3.2: fixed a bug in vcf2eigenstrat that would fail on VCFs with missing Quality values.
- V 1.5.3.1: updated to latest GHC pedantic compilation
- V 1.5.3: Upgraded to sequence-formats 1.7.0 introducing an option for plink popName encoding, and improved pileup-Parsing to allow for skip-reference characters
- V 1.5.2: Fixed a bug with --samplePopName having to be entered after -p or -e. Fixed a bug in the sequence-formats dependency.
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2 changes: 1 addition & 1 deletion sequenceTools.cabal
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name: sequenceTools
version: 1.5.3.1
version: 1.5.3.2
synopsis: A package with tools for processing DNA sequencing data
description: The tools in this package process sequencing Data, in particular from ancient DNA sequencing libraries. Key tool in this package is pileupCaller, a tool to randomly sample genotypes from sequencing data.
license: GPL-3
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6 changes: 3 additions & 3 deletions stack.yaml
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Expand Up @@ -2,7 +2,7 @@ resolver: lts-21.17
packages:
- '.'
extra-deps:
# - sequence-formats-1.7.0
- git: https://github.com/stschiff/sequence-formats
commit: 88dc6f598d2152929e8e9e6ed371487954f26c1e
- sequence-formats-1.8.0.0
# - git: https://github.com/stschiff/sequence-formats
# commit: 88dc6f598d2152929e8e9e6ed371487954f26c1e

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