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Export bigwig files from split fragments file with tests #1887

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This PR is based on #1383

Baboon61 and others added 30 commits April 19, 2023 10:56
Addition of ExportGroupBW, CreateBWGroup and '%bcin%', to export bigwig file from split fragments file
Some changes from @timoast comments on the PR
SplitFragments inside the export function and check existing files
Add relative count normalization per group per 10k
Roxygen documentation and tests
I have an error passing the GroupNames via x
@lldelisle
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@timoast if you could help me to have rtracklayer installed to make the test pass would be very helpful.

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timoast commented Jan 17, 2025

Thanks for reviving this PR @lldelisle, I have made some updates so the tests pass

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Why don't you want rtracklayer to be a requirement? I think it is better if this part is also tested in the CI, no?

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timoast commented Jan 17, 2025

rtracklayer is in the suggested packages, the tests will run if rtracklayer is installed. The CI should install suggested packages, I'm not sure why it's not being installed correctly right now. I will have to investigate later

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3 participants