Skip to content

Releases: tokebe/niclassify

1.5.4 beta

13 Mar 01:40
Compare
Choose a tag to compare
  • Fixed a bug where GBIF results without a type property would cause status lookup failure

Full Changelog: v1.5.3-beta...v1.5.4-beta

1.5.3 beta

31 Oct 21:25
Compare
Choose a tag to compare
  • Changed scikit-learn version to 0.24.0
  • Fixed a typo in the manual
  • Updated Acknowledgments

1.5.1 Beta

07 Jun 00:30
Compare
Choose a tag to compare
  • Fixed a bug which would cause the program to crash upon finding stop codons while checking reading frame
  • The classifier now uses balanced_subsample instead of balanced for class weighting, which should slightly improve training quality when training on slightly unbalanced data.

1.5.0 Beta

18 Dec 20:48
Compare
Choose a tag to compare
  • When training the classifier, instead of removing any rows with any missing data, columns and rows with all missing data are removed.
    • When rows/columns are removed, this is logged and the user is notified.
  • lxml upgraded to latest security patch

1.4.0 Beta

30 Nov 01:01
Compare
Choose a tag to compare

(1.3.3 removed due to critical bug)

  • Fix #24
  • Implement #23
  • Update manual and place copy of manual pdf in docs like a sensible project
  • Improved updating of primary window status bar and standardized status bar/popup code in data tool

1.3.0 Beta

12 Jul 17:37
6d0b36e
Compare
Choose a tag to compare
  • User may now save and load species delimitations, meaning that the user can supply their own delimitation and skip that computational step.
  • File reading will read csvs/tsvs/etc successfully regardless of improper file typing.
  • Removed deprecated files
  • Default number of classifiers changed to 100 to cut default train time and avoid extreme overfits
  • Feature generation now logs properly
  • Fixed various minor bugs and message typos

1.2.0 Beta

08 Jul 17:36
d8fdef3
Compare
Choose a tag to compare
  • Split the work of fasta alignment by a given taxonomic level. This should be faster and improve the quality of alignments (fewer fixes for the user to make).
  • The program now detects any uncaught exceptions and saves a traceback file, alerting the user.

1.1.2 Beta

10 Jun 18:55
Compare
Choose a tag to compare

1.1.1 Beta

09 Jun 13:00
f0c8c81
Compare
Choose a tag to compare
  • Require latest Pillow to fix Pillow-related vulnerabilities

1.1.0 Beta

08 Jun 20:26
bc1653c
Compare
Choose a tag to compare
  • Support for Linux
  • Automated installation (easy launch) support for Ubuntu Linux
  • Experimental Support for Mac (automated installation not yet final)
  • Fix downloading of large files from BOLD
  • Various package updates to address url-access vulnerabilities