gotoh-algorithm

Here are 3 public repositories matching this topic...

poke1024 / pyalign

Fast and Versatile Alignments for Python

bioinformatics alignment digital-humanities needleman-wunsch-algorithm smith-waterman-algorithm gotoh-algorithm

Updated Jun 8, 2023
C++

Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

smith-waterman needleman-wunsch jaro-winkler levenshtein-distance alignment longest-common-subsequence sequence-alignment hamming-distance jaro shortest-common-supersequence gotoh hirschberg gotoh-algorithm

Updated Jan 14, 2025
Python

RJPenic / OSALG

Star

Optimal Sequence Aligner allowing for Long Gaps

bioinformatics simd sequence-alignment gotoh gotoh-algorithm

Updated May 19, 2020
C++

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