MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
🔬Python package for high-throughput single-cell imaging analysis.
Fluidity Calculator – ImageJ/Fiji tool to calculate membrane fluidity from spectral imaging data.
CellLocator: Automated live-cell image analysis for Incucyte®. Streamlined cell segmentation, fluorescence quantification, and kinetic analysis. Open-source and freely available under the MIT License.
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
This repository is the summation of the previous works of our group in microscopy image analysis.
MATLAB-based software for cell counting
Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"
Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.
Pipeline to assist in understanding sub-cellular events in large 4-D, 3-channel lattice light sheet
count lipid droplets in tetrahymena thermophila with Python
An application for automated high-throughput analysis of cancer and endothelial cell dynamics in hydrogels.
Computer vision tool using Tensorflow and Keras to train U-Net and U-Net++ with the optional use of EfficientNetB7 as a pretrained backbone for binary segmentation of microscopy images
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