Updated tests and vignettes so R CMD CHECK passing

DESCRIPTION

@@ -12,7 +12,7 @@ Description: What the package does (one paragraph).
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.2
 Biarch: true
 Depends: 
     R (>= 3.4.0)

R/bmsma-package.R

@@ -1,8 +1,6 @@
 #' The 'bmsma' package.
 #'
 #' @description A DESCRIPTION OF THE PACKAGE
-#'
-#' @docType package
 #' @name bmsma-package
 #' @aliases bmsma
 #' @useDynLib bmsma, .registration = TRUE
@@ -14,5 +12,10 @@
 #'
 #' @references
 #' Stan Development Team (NA). RStan: the R interface to Stan. R package version 2.26.23. https://mc-stan.org
-#'
+
+#' @keywords internal
+"_PACKAGE"
+
+## usethis namespace: start
+## usethis namespace: end
 NULL

R/stanmodels.R

@@ -1,9 +1,10 @@
 # Generated by rstantools.  Do not edit by hand.
 
 # names of stan models
-stanmodels <- c("bsma", "ols")
+stanmodels <- c("bmsma", "bsma", "ols")
 
 # load each stan module
+Rcpp::loadModule("stan_fit4bmsma_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4bsma_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4ols_mod", what = TRUE)
 

src/RcppExports.cpp

@@ -12,10 +12,12 @@ Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
 #endif
 
 
+RcppExport SEXP _rcpp_module_boot_stan_fit4bmsma_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4bsma_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4ols_mod();
 
 static const R_CallMethodDef CallEntries[] = {
+    {"_rcpp_module_boot_stan_fit4bmsma_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4bmsma_mod, 0},
     {"_rcpp_module_boot_stan_fit4bsma_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4bsma_mod, 0},
     {"_rcpp_module_boot_stan_fit4ols_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4ols_mod, 0},
     {NULL, NULL, 0}

src/stanExports_bmsma.cc

@@ -0,0 +1,32 @@
+// Generated by rstantools.  Do not edit by hand.
+
+#include <Rcpp.h>
+using namespace Rcpp ;
+#include "stanExports_bmsma.h"
+
+RCPP_MODULE(stan_fit4bmsma_mod) {
+
+
+    class_<rstan::stan_fit<stan_model, boost::random::ecuyer1988> >("rstantools_model_bmsma")
+
+    .constructor<SEXP,SEXP,SEXP>()
+
+
+    .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
+    .method("param_names", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_names)
+    .method("param_names_oi", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_names_oi)
+    .method("param_fnames_oi", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_fnames_oi)
+    .method("param_dims", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_dims)
+    .method("param_dims_oi", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_dims_oi)
+    .method("update_param_oi", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::update_param_oi)
+    .method("param_oi_tidx", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::param_oi_tidx)
+    .method("grad_log_prob", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::grad_log_prob)
+    .method("log_prob", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::log_prob)
+    .method("unconstrain_pars", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::unconstrain_pars)
+    .method("constrain_pars", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::constrain_pars)
+    .method("num_pars_unconstrained", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::num_pars_unconstrained)
+    .method("unconstrained_param_names", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::unconstrained_param_names)
+    .method("constrained_param_names", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::constrained_param_names)
+    .method("standalone_gqs", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::standalone_gqs)
+    ;
+}