Merge branch 'main' of https://github.com/umg-minai/cicu

.github/workflows/ig-publish.yml

@@ -48,10 +48,21 @@ jobs:
         with:
           args: ./scripts/run-ig-publisher.sh
 
+      # Step to check if the repository is public
+      - name: Check if repo is public
+        id: check_repo
+        run: |
+          REPO_VISIBILITY=$(curl -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \
+          https://api.github.com/repos/${{ github.repository }} | jq -r '.private')
+          if [ "$REPO_VISIBILITY" = "false" ]; then
+            echo "REPO_IS_PUBLIC=true" >> $GITHUB_ENV
+          else
+            echo "REPO_IS_PUBLIC=false" >> $GITHUB_ENV
+          fi
 
       # deploy implementation guide to github pages
       - name: Deploy
-        if: (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main')
+        if: env.REPO_IS_PUBLIC == 'true' && (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main')
         uses: peaceiris/actions-gh-pages@v3
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
@@ -60,7 +71,7 @@ jobs:
 
       # upload binaries to release
       - name: Upload binaries to release
-        if: (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main')
+        if: env.REPO_IS_PUBLIC == 'true' && (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main')
         uses: svenstaro/upload-release-action@v2
         with:
           repo_token: ${{ secrets.GITHUB_TOKEN }}

README.md

@@ -1 +1,29 @@
-# Template for CPG-on-EBMonFHIR machine-readable clinical practice guidelines# CICU
+# ICU Patient Care Recommendations Repository
+
+This repository contains machine-readable recommendations for ICU patient care in FHIR format, specifically following the [CPG-on-EBMonFHIR](https://github.com/ceosys/cpg-on-ebm-on-fhir) format.
+
+For additional information, see the [IG documentation](https://umg-minai.github.io/cicu/artifacts.html).
+
+## Recommendations
+
+Below is a table summarizing the recommendations available in this repository.
+
+| No | Name                            | Title                                            | Version | Date       |  Description                                                                                      |
+|---:|---------------------------------|--------------------------------------------------|---------|------------|--------------------------------------------------------------------------------------------------|
+|  1 | [PainMonitoring](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUPainMonitoring.html)      | Intervention for Population: ICU Patients - Pain Monitoring | 1.0     | 2023-10-05 | In ICU Patients Pain should be monitored with a validated score at least once per shift          |
+|  2 | [SedationMonitoring](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUSedationMonitoring.html)  | Intervention for Population: ICU Patients - Sedation Monitoring | 1.0     | 2023-10-05 | In ICU Patients Sedation Goal and Degree should be monitored with a validated score at least once per shift |
+|  3 | [DeliriumMonitoring](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUDeliriumMonitoring.html)  | Intervention for Population: ICU Patients - Delirium Monitoring | 1.0     | 2023-11-13 | In ICU Patients Findings ind Delirium Monitoring should be documented at least once per shift    |
+|  8 | [DAASMonitoring](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUDAASMonitoring.html)      | Intervention for Population: ICU Patients - DAAS Monitoring | 1.0     | 2023-11    | The treatment goal and the current level of analgesia, sedation, anxiety, and delirium should be standardizedly documented at least once per shift (typically every 8 hours) |
+|  9 | [NRS<4](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUNRSgoal.html)               | NRS Intervention for Population: ICU Patients NRS goal <4 | 1.0     | 2023-11-17 | NRS in ICU Patients should be <4                                                                 |
+| 10 | [Sedation-Goal-RASS](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUSedationGoal.html) | RASS Intervention for Population: Sedation Goal RASS | 1.0     | 2023-08-13 | RASS in ICU Patients should be 0 or 1                                                            |
+|  11 | [Delirium-Goal](https://umg-minai.github.io/cicu/PlanDefinition-RecommendationPatientsICUnoDeliriumGoal.html)       | Delirium Intervention for Population: ICU Patients Delirium Goal | 1.0     | 2023-11    | ICU Patients should be delirium free                                                             |
+
+## Authors
+
+- [Lisa Vasiljewa](https://github.com/lisavasiljewa)
+- [Carlo Jurth](https://github.com/cjurth)
+- [Gregor Lichtner](https://github.com/glichtner)
+
+## Contributing
+
+Contributions to this repository are welcome. 

_updatePublisher.sh

@@ -117,13 +117,16 @@ if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
 
   curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
   cp /tmp/_gencontinuous.new _gencontinuous.sh
+  chmod +x _gencontinuous.sh
   rm /tmp/_gencontinuous.new
 
   curl -L $gen_sh_url -o /tmp/_genonce.new
   cp /tmp/_genonce.new _genonce.sh
+  chmod +x _genonce.sh
   rm  /tmp/_genonce.new
 
   curl -L $update_sh_url -o /tmp/_updatePublisher.new
   cp /tmp/_updatePublisher.new _updatePublisher.sh
+  chmod +x _updatePublisher.sh
   rm /tmp/_updatePublisher.new
 fi