TxDb.Paeruginosa.PAO1

Annotation package for Pseudomonas aeruginosa str. PAO1. Data source: NCBI.

Installation

You can install the development version of TxDb.Paeruginosa.PAO1 like so:

devtools::install_github('utubun/TxDb.Paeruginosa.PAO1')

Example

This is a basic example which shows you how to solve a common problem:

library(TxDb.Paeruginosa.PAO1)

pao1tx <- TxDb.Paeruginosa.PAO1

# show the information related to the build
pao1tx

# extract genes, as genomic ranges
gr <- GenomicFeatures::genes(pao1tx)

# show extracted ranges
gr

# convert gene ID into transcript names
head(
  (nm <- biomaRt::select(pao1tx, names(gr), 'TXNAME', 'GENEID'))
)

More examples

methods(class = class(pao1tx))

help(package = 'GenomicFeatures')