Add Tobacco mosqueado virus

virtool · Dec 14, 2018 · 9af9dd2 · 9af9dd2
1 parent 976200f
commit 9af9dd2
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diff --git a/src/t/tobacco_mosqueado_virus/otu.json b/src/t/tobacco_mosqueado_virus/otu.json
@@ -0,0 +1,5 @@
+{
+    "_id": "bh30e9ob",
+    "name": "Tobacco mosqueado virus",
+    "abbreviation": ""
+}
diff --git a/src/t/tobacco_mosqueado_virus/pup/18xjopup.json b/src/t/tobacco_mosqueado_virus/pup/18xjopup.json
@@ -0,0 +1,7 @@
+{
+    "_id": "18xjopup",
+    "accession": "NC_030118.1",
+    "definition": "Tobacco mosqueado virus isolate RS-01, complete genome.",
+    "host": "Nicotiana tabacum (tobacco)",
+    "sequence": "AAATTAAACCAAACCCATTACAGCAAAACGAATACAAACACATCCAAGCAATCAGTTTTCTTGCAATTTACAAGCAAATTACAAGCAATTTCATTGGTCAGTTCGCAGTACTCTAATCATTCAAACGCACGTAGCCACTCGCAGCTAATTCACAGCTTTTCATAAAGTTTATTTAAGCATTTCCTTGAGTTTACCACATTGTTCTGATGGCATTGTTAGCTAACAACGTAATTATGTTCGGGAGTGTGCCAGCGGTCATCAAACCGCAGGTACTTGAATTAGAACAACCGGGGGTGTTGTTCAGTTTTCTGGACTGTGTAGCTGATGCACAAGTCAGCACTCAGCCAATTCAATTTGGCACATTCAGCTTGCATTCTGAGGCTAAACCACACACCGTGATGGCTTCTAAAGCACTGGGGCAAATCGAGAAAAGCACATCAGTAACACTTTCCAATCAAGTGTGCGTTATAGACCCTTTTGCGGGATTAGAAGAACAGCTCAAGCCGTATTTTGAGCGCAGGAAATACGCATCAATATATAAGAATGCCAAGGGAGTCACACGCTATCGCCGCCCATCTGAGAGGAAGATTAGCAAGATAAAACTTGCTAAGCATAGGCAAGAGGAAGAACTGCGGAAGTTCTACAACAGCCCACCGAGCATAGTGTCATCTATCTCGATAGGTGGTGGAGCTACTCCATCCGCAATGGAGGCCCAAATAGCTGGTATCAAGACAGCTACTTCTGTGAGGATAAAGAAGCCTCAAAATAAACCACTATTTGTAAAAAGAAGTGGTGTTGTCAATTGCTTGATTAGGGAAATCAGGCAGATCGCAGTTTCGTCACAACTGCAGATTGRATTGGTGGGAAAGAAAGCCCACAAAATATCATACGCCAAGCTGAACGGGCGCGATGTCGCTCGTGTTGATTTAAAACACATGCAAGGGAAGAAGCTATCCACTGACTTCTTTATGGATTCAAGAATTGAGCAGATCATCGCTCAGTTGGCTAGAGTCTCCAGCTGGGGAAGTCACTACAAACTGCATGAGCTATCCAAGGGTTGTAGTGGGTTCATTTTGAACGCTGAACGAGCCACACATGGAGAGATTGTCGGACACGACAAACTTCTCATTGTTAGAGGAGCACTACACCAACGAGTTTTTGATGCACGACTTAAAATGAATATGGACGAAGTATTCCGCATGACCCATTACTCTGCGGCGGATCAATTTTGGAAAGGTTTAGARTCCAATTGGTCTAAACTGAGGGAAGGTCCATCTCATGAGTGCTCGAAGGRCTTCACAGTTGAAGATTGTGGCATAGTGGCCACAATTGTAGCTCAGAGTTTGATACCCTGTTACAAACTCACATGTGGAATTTGTGCACACAATTTTTCTGAACTGAACCRAAAAGAAGTTATTGAGCAGCTAAGCAACACAACACAAAAAGGGCTAACTCGTGTAGGTGACTATGCTCCAAAGTTCACTCATGTTCATCATCTACTCTCAGTTTTGAACAACCTGACAACGCCAATTTCTGATGGCTCAGAAATGTTTAGCACTATTTTCAAGATGGTTGGGGATAAGCAACAGAGTCCCTTTAAACACCTGAATGTACTAAATGAATTCTTTGCTCGAGGTTTTCAGAACAACYCACTTGACTGGGAAGTGGCACGAGCAAGCTTACTTGAGTTGGCCCAGTACCAGAAGAACAGAACTGACAATATCAAAAAGGGTGACATCTCATCCTTTAGGAACAAGTTATCTGGTAAAGCCAATTATAATTTGTACTTGTCTTGTGRTAACCAACTCGACAAGAATGCAAATTTCATATGGGGAACTCGAGAATACCATGCAAAGAGGTTCTTTTCAAACTTCTTTACAGAAATAGATCCACAAAAGGGCTACTCCCAGTATGAATTAAGAAGAAGCCCCAACACCATCAGGAAGCTCGCAATTGGGAACTTAATAGTGCCTCTCGACCTAGCTGAGTTTAGAACCAGAATGAAAGGAGAGCATATTAAGCAACCAGCAACAAGCAAAAAGTGCATTAGCTATAAGAATGGTAATTTTGTGTACCCGTGTTGCTGTACTACACTTGAAGATGGAACAGCCATTGAATCCACAGTATATGCACCTACCAAGAAGCATATAGTCATAGGAAACACAGGTGACACAAAGTTTGTTGATCTACCAAAGGGGGAAACGGATATGCTATACATCGCAAAAGAAGGATATTGTTACATCAATGTTTTTCTAGCATTGTTAATCAATATCAGAGAGGATGAAGCAAAGGACTTCACCAAGAAAGTTAGAGACATATTCGTTCCCAAGCTTGGGACATGGCCATCCTTGATGGATTTAGCAACAACATGTGCTCAACTCCGTATTTTCTTCCCAGATATCCATGATGCTGAACTGCCTCGCATTTTAATTGATCATAACTCACAAACATGTCATGTGGTAGACTCATATGGCTCAATTAGCTCAGGATACCACATACTGAAAGCATCCACTCTGTCACAACTAGTGCTTTTTGCAAATGATGAACTTGATTCAGAGATAAAGCACTACAGGGTTGGTGGAAAGAGTCTAGGTCGTGCTCCACAGAATGCCGATGATCTTTGCACAGATTGGAAAGTCTTCCACACCCCTAGTTGTGGTATTAGTGAAGTCGATGCAATGAAAGTTCTATTTAAAGGCATCTTCAAACCAAAAGTGATGCGAGAGTTACTTTTGGATGAACCTTACATCATGCTGTTGTCGTTGTTATCCCCAGGAGTATTGATGGCAATGTATAACAATGGGGCATTCGAAACAGCGATTAAGTTGTGGATTAATGAGAAACAGAGCATCGCGATGATAGCCACCATGTTATCCAATCTTGCCATGAAGGTGTCTGTAGCAGAAACACTGCTTAAGCAAGTCGCAATCATAGAGAGCGCTTCCCATGATTTGTTTGACGTGACTTGTGATGGTTTTAAATTACACTTAACATATCACACAGCTCTCACATTACTAATGCGATTGAAAGAGAAATCAAATGGTGATGTCGAGTTAATCTCTGGCGGATATTTGAATTTTGAAAATGACATAATTCAAATAATAGAAAAAAATTATCTAGAACGCTTGGAGGAAGAATGGAGCGCTTTAACTTGGCGAGAAAAGCTATCCGCAACTTGGCATGCACGAAGGCAAAAACGTGCTATTGTAAAATATTTGCACCCAGTAAAAACAGYAGATTTGAAAGGAATGTACAATATCTCACCAAGTGCTGTTTTTACAAGGGCTGTGGGCCATACAAGAAAAAGGATCACTGAGGTCAAAGGCCACATCTCGCGAGCTGTACATAATAGATGTGTCTCTCTTTCTTCTTACATGTTAGGTAGGTTTTTTAGGTGCATACCAAATGCAAGAACACTAATTAGTACAATTTTTATCCTTTCTGCTTTATTTAATATATTTGGTTCAATGCATCTCATTGTACAGGACAATAAAAGGATTAAGCTTCAATTGAGTAATCATGAGCGGAGAATCAAAGAAGACTTGTGCGATGACTTATACAAGACACTAGAGAGGAAGCTTGGAAACAAACCCACATATGAGGAATATCTACAATTTGTCGGTGGGATTAATCCAGAGCTGGAAGTGTTTTTGGTTGAGCAATACACACCAGATGTCGTACATCATCAGAGAGGAACTGCTGATATTAAGAAACTGGAGCACATARTCGCTTTCATTTCTTTAGTCATTATGGTTTTTGATGCTGATAGGAGCGATTGCGTTTTCAAGACGTTAAATAAGTTTAAAGGCATCATTAGCTCAATGGACTCAGAAGTGCGCCATCAGTCTATTGACGACATCATGAATGATTTTGAGGAGAAGAACCTTACAGTCGACTTTGAACTTGATGACAGCGTGCAGAAGGACATTAGCAGTGTTGACACACAGTTTGGTAAGTGGTGGGAAGATCAGGTCGAAAGAGGCTTCGTAATTCCACATTACCGCACAGAAGGAACATTTATGGAGTTCACTCGCGCAACCGCTGCAATGGTGGCGAGCAACATCGCACAAAGCTCTGATCGAGACTTTCTGATTAGAGGTGCAGTAGGGTCGGGCAAGTCAACTGGACTACCATACCATTTGAGCACATCAGGGAAGGTTCTTCTTATAGAGCCCACAAGACCTCTCGCAGAAAATGTTTATAAGCAGTTGTCTGGAGCACCATTCTTTCTCAAGCCAACTATGAGAATGAGAGGAAATAGCGTGTTTGGCTCGTCACCTGTATCAGTCATGACTAGTGGCTTTGCACTTCACTTCTTTGCAAACAATATCACACAGCTACAAGAGATCCAGTATATCATCATAGATGAGTGCCATGTAATGGATGCTTCTGCGATGGCATTCCGAAGTTTGATAAGCGCATACCACTGTAGTTGCAAAGTCATGAAAGTGTCGGCAACTCCGCCAGGCAGAGAAGTTGAATTCACAACACAACACCCAGTGAATCTTGTGGTGGAGGATAGCATTTCTTTTAAGTCCTTTGTGGATTCGTTACACACGGGTGGCAATACAGATGTTCTAAAGTTTGGAGTCAACACATTGGTATATGTGGCAAGCTACAATGAGGTTGATCAACTCTCTAAATTATTGACTGACAAGGGCATGTTAGTGACAAAAGTGGATGGTCGAACAATGAAACATGGTGATCTCGAAATAACCACAAAAGGCACCAAGGAGAAACCACATTTTGTTGTAGCAACAAACATAATTGAAAATGGTGTCACTCTTGATATAGACACAGTGGTGGATTTCGGTATGAAAGTCAGCCCCTTTCTAGATGTAGACAACAGAAGTGTTGCCTATAGCAAAGTTAGTATCAGCTATGGTGAGCGTATTCAACGCTTGGGGCGTGTTGGTAGAATCCAGAAGGGAACAGCAGTGCGAATTGGGCACACCGAAAAAGGTTTGATTGAGATCCCTCAAATGATTTCAACCGAAGCGGCATTATATTGTTTTGCATACAACTTACCAGTCATGGCAAGTAATGTGTCAACTAGTGTTGTTGCAAAGTGCACAGTTAGGCAAGTCAAAACAATGCACGCCTTTGAGCTGAGCCCATTTTTCACATGCAATTTTGTTGCTCATGATGGCACAATGCATCCTGCAATTCATGAATTATTGAAGAAATACAAGCTCCGAGATTCAATGATTCCTCTCAGTGAGTCCTCAATTCCATACAGGGCATCAAGTGATTGGATCACAGCATTTGAATATGAGAAAATTGGTATTAGGCTTGATTTGCCTCAAGATGTGAAGATAGCTTTCCACATTCGTGACCTCCCAGGGAAGTTGCACCAAGATTTGTGGGAAGCTATCATGAAGTATAAGTCAGAAGCAAATTTTCCTTCGATCCGATCAGCTTCCATAAGTAAGATTGCATACACTCTGAGCACTGATCTCTATGCAATCCCGAGAACAATAGCTTTAATCGACAAGCTCATCGAGGATGAAAGAACTAAGCAATATCAGTACAGGAGTTTGGTTGATAATGGTTGTTCGAGTATGTTCTCCATTGTAGGTATAACGAATGCTTTGAGGGCTAAATACTCTCAAGACCACACTGGAGAGAACATTCGTAAATTGGAAGCGGCAAAGGCTCAACTTAAGGAGTTCAACAATCTTGGTGGAACACGTGACGAGATCAATCTCATAAAAAGATTTGAGTCTCTTCAATATGTACACCACCAGTCAAAAGGTGCTCTGGCAAGGGATCTTAAGCTGAAGGGAGTTTGGAATGCACCTCTCATTGCACGAGATGCAATCATAGCTTGTGGTATTGCAACGGGAGGAGCGTGGCTGTTATACTCATGGTTCACCAGCCAATTTACAAGCGTAACACATCAAGGCAAAGCCAAGTCAAAGAGAATTCAAGCCTTAAAATTCAGGAAGGCGAGAGACAAGAGAGCTGGGTTTGAAATAGACAACAATGAGGACACAATTGAAGAGTATTTTGGCTCTGCTTACACAAAGAAAGGCAAAGGAAAAGGCACAACAGTTGGAATCGGGAAAACAAACCGAAAGTTCATAAACATGTATGGGTTTGATCCCGGTCAGTTTTCATATATAAAGTTTGTGGATCCACTGACAGGAGCCCAAATAGAGGAGAATGTGTATGCAGATGTTGTTGACGTTCAAGAAAGATTTGGTGAAATTCGCCACAACATGCTCATTGATGGAGAGTTGGAAACTCAGCATTTAAATTCCAACACCACAATACATGCTTATTTAATAAAGGATTGGTCTGACAAGGCGCTGAGAGTGGATCTCACACCACGTAACCCATTACTCGTCAGCAAGCTCTCAAGCTCAATTGCTAAGTTTCCTGAAAGGAGTGGACAGATTCGCCAAACAGGGCCATCAGTTGAAGTTGATGTGAAGGACATTCCAGCAGAACCTGTCGAGCATGAATCCAAGTCGTTGCTCAAGGGACCTCGGGACTATAATCCAATTGCTCAAGTGATCTGTCGATTAACAGTGTCCTCAGAGCACGGTTCTTGCACAACGTTCGGAATTGGATTTGGTGCGCTGATAATTGCAAACCACCATTTGTTTAAGAGCTTTAATGGAAGTCTGGAGCTAAGATCTCATCATGGTGTTTTTAGAGTGCCAAACCTAATGAGTCTGGAAGTCAAACCACTGAAGGGTAGGGATTTAATTCTAATCAAGATGCCCAAGGATTTTCCAGTTTTTCCCCAGCGATTGCATTTTAGGAGTCCGCAGGAAGCTGATAGAGTGTGCCTGGTTGGTTCAAACTTCCAAGAGAAGTACATATCCACAGTTATATCTGAAACGAGTGCCACCTATCCAGTCCAAAGAAGCACATTTTGGAAGCATTGGATTTCAACTGATGATGGGCATTGTGGTCTACCGATTGTGAGCACATCTGATGGGATGTTACTGGGCATACACAGTTTAGCAAATAACCGCAATAGTGAAAACTATTATACAGCATTTGACATTGATTTTGAAGCGGAATATTTGCGAAACGATCAGCATTCGGATTGGGTGAAGAACTGGAAGTACAACCCAGATAATGTACTGTGGGGTCCCTTGAAGTTAACAAAAGATACTCCTACAGGTATGTTCAAAACCACCAAGCTCATAGAGGACTTGTTTGCCCATATACAAGAACCAGTTCGGGAACAAGCATCAAACACATCATGGATGCTGGAAGCTTTAAAAGAGAACTTGTCAGCTGTGGCGTACATGAAGAGTCAACTAGTCACAAAACATGTTGTGAAAGGTGAGTGTATGCTCTTTAAGCAGTATCTTGAATGTGATGAGGAAGCAAAGAAGTTCTTCCAGCCATTAATGTGGGCRTATGGAAAGAGTCTTCTTAACAAAGAAGCGTACATTAAGGACCTTATGAAGTACTCTAAACCAATTGAGGTTGGGGTGGTCGATTGTGATGCTTTTGAAGAAGCAACTTGTAGGGTCATACTGTACATGAGGCTCAAGGGGTTCAAACAGTGTGCATTTGTGACTGATGAACAAGAAATTTTCAACGCTCTTAACATGAACGCTGCAGTGGGAGCCATGTATGGAGGCAAAAAGAAGGATTTCTTTGCTGAATACTCTCAAAGTGATAAAGAGCAGATCATAAAAGAGAGTTGTTTTAGGCTATATACAGGTAAACTTGGTGTTTGGAATGGCTCACTCAAAGCTGAACTGAGGTGCAAAGAAAAGATAGAAGCCAACAAAACTCGCACCTTCACWGCAGCTCCTATAGACACATTGCTTGGTGGAAAAGTTTGTGTTGATGATTTCAACAACCAGTTCTATTCCCAAAACATAAATTGCAGTTGGACAGTGGGAATGACTAAGTTCTATGGTGGTTGGAATAGATTGCTAACAAGCCTCCCAGACGGCTGGGTTTACTGTGATGCTGATGGCTCACAATTTGACAGTTCTCTCACGCCATACTTAATCAATGCAGTTCTTTCCATAAGATTTGCTTTCATGGAGGATTGGGATATAGGTTTTCAGATGCTTCGCAACCTATACACCGAGATCGTGTATACACCGATCTCCACCCCTGACGGAACTATTGTGAAAAAATATAGGGGAAACAACAGTGGACAGCCTTCAACAGTTGTAGATAACTCTCTCATGGTCGTTTTGGCAATGCACTATGCTTTCACGAAGGAGGGTTGGACATTTGATGAGCTAGAAGAGTATTGTAAGTTCTTCGTCAATGGTGATGATCTTGTTATAGCCGTCAGACCCGACCGTGAGAAGTTTCTTGACACTCTACAACAGCACTTCTCTGAATTAGGATTGAATTACGACTTTTCCTCAAGAACAAGAAACAAAGAAGATCTTTGGTTCATGTCACACAAGGGGATTCTTGTTGATGGGATTTATATTCCGAAGCTTGAGGAAGAGCGCATTGTTTCAATTCTACAATGGGACAGAGCAGCCTTACCAGAGTATAGGCTTGAAGCAATATGTGCAGCAATGATTGAATCATGGGGTTACCCGAAGCTAACTCATGAAATAAGAAGGTTCTACAGTTGGCTGTTGGAGCAAGCACCATATAGGCAACTGGCACAAGATGGGAAAGCTCCATACATATCAGAACTGGCACTCAAGAAGTTATACCTGAACTGTGATCTAAAGAGTGAGGAGCTAGAAGCATATCTCAAGTTTTTCGCTGAGCTTGATGATGATTTTGAGTGTGGTGAATACGAGGTGTCACATCAAGCAAAAGACGACACAAAAACCACAGAGAGCGAAGCAAGTGTCTTGGATGCTGGAAATACTAGCAAAAAGCAAGCCAGTAGGGAACCGGTCCAACAAGGGAAGGCAATTGAAGGAACTAGTTCCGGAGCAGTTCAAGCAGAGGCACGAGACAAAGATGTTAATGCAGGTACACAAGGCACATTTCAAGTACCGCGCATAAAATCAATAACTAGTAAGATGCGCCTTCCAAAGGCAGCCGGCAAAGTTGCATTAAATCTTGAGCACTTGCTAGAATACACACCAAGTCAATTGGACATATCGAACACTAGAGCTACACAGAGTCAATTCGATACATGGTATGAATCTGTGAAAAATGCTTATGATGTCCAGGATGGGGAGATGGGGACCATATTAAATGGTCTTATGGTTTGGTGTATTGAGAATGGAACATCTCCAAACTTGAATGGAGTGTGGACAATGATTGACGGTGAGGAACAAGTTGAATTTCCATTGAAACCAGTCATTGAAAATGCAAAGCCTACTTTTAGGCAAATAATGGCACACTTTTCAGATGTTGCAGAGGCGTATATTGAAATGCGCAACAAAAAGGAACCATATATGCCACGGTATGGTTTGACAAGGAATCTGCGAGATATGAGCTTGGCTCGTTACGCCTTTGACTTCTTCGAAGTTACATCTCGCACATCCACCCGCGCCAGGGAAGCTCACATTCAAATGAAGGCGGCTGCGGTCAAAACATCGCAAACCAGAATGTTTGGGCTGGATGGTGGCATCAGTACACAAGAGGAAAACACAGAACGCCATACCACAGAAGATGTTAACCCCAACATGCATACTTTGCTTGGGGTGAGGAACATGTAATTGTTTTTCATGTGGCGGACTGGGCTGAAAAATTAGTATATGTAGTATGCAATATATATTATGGCTTTTCCTGTACTACTTTTATGTGAACTTTACTTTACTAGCAGTGAGTAGTAACTCCGAACTTACATGAGGTGACTTGCAGATTCTGTCTGTGAGGTGACTTGTGTAGCTTCAGTAATAGTATTCAGTAAGCATAATTGGTCCTTGATAGGGCTTCAGTGGCTTCCAGATTCTGTCTGGGARGGTGATGGACGCCTGCCTCCGGGAGAC"
+}
diff --git a/src/t/tobacco_mosqueado_virus/pup/isolate.json b/src/t/tobacco_mosqueado_virus/pup/isolate.json
@@ -0,0 +1,6 @@
+{
+    "id": "pup",
+    "source_type": "isolate",
+    "source_name": "RS-01",
+    "default": true
+}