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pyvcell_fvsolver Python module#2

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jcschaff merged 29 commits intomainvirtualcell/vcell-fvsolver:mainfrom python-modulevirtualcell/vcell-fvsolver:python-moduleCopy head branch name to clipboardJun 3, 2024

+1,007-506

Commits

Commits on May 28, 2024

• add submodule for pybind11

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• rename CMake project to fvsolver

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• start pyvcell-fvsolver with trivial pybind11 example, adds two numbers

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Commits on Jun 2, 2024

• const char* and nullptr for C++ FV solver

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• create pyvcell_fvsolver Python module using pybind11 and vcell library

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• static libzip build, FiniteVolume_x64 and Python don't need libzip.dylib

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• separate scikit-build-core build using 'pip install ./pyvcell_fvsolver'

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• fix prior nullptr upgrade for messaging

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• update Dockerfile for HPC builds

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• try to fix windows build problem, include windows.h earlier

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• define ZIP_STATIC for windows

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• WIP: python build CI/CD actions

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• reconcile whitespace and dead code in CMakeLists.txt before merge

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• one /CMakeLists.txt with with OPTION_TARGET_PYTHON_BINDING [true]

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• don't test on Docker, install platform deps for wheels

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• install platform dependencies for pip action

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• fix path to pybind11

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• debug CI/CD matrix

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• install pytest for pip action

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• fix pytest

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• enforce mingw LLVM toolchain for pip build on windows

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Commits on Jun 3, 2024

• update platform LLVM paths for pip and wheel actions

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• WIP: pip and wheels config

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• debug with tmate

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• try dynamic binding for hdf5 for python/linux

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• fix windows type conflicts in SolverMain

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• fix windows pip test with correct shell

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• don't trigger conda/wheel actions automatically and add tmate debug

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• updated README.md

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