GWAS_FM

This repository contains scripts for QC and genome-wide analysis study (GWAS) using:

    Data       : UK Biobank 
    Method     : SAIGE, Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016)
    Phenotype  : fibromyalgia syndrome
    Covariates : age, sex, genotyping platform, first 40 PCs
    Platform   : x86_64 GNU/Linux beluga1.int.ets1.calculquebec.ca (computecanada)  

    SAIGE script source: https://github.com/weizhouUMICH/SAIGE