Merge pull request #317 from waveygang/group-fix #1231
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| on: | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - '**/*.md' | |
| pull_request: | |
| branches: [ main ] | |
| paths-ignore: | |
| - '**/*.md' | |
| name: build and test | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install required packages | |
| run: sudo apt-get update && sudo apt-get install -y | |
| git | |
| bash | |
| cmake | |
| make | |
| g++ | |
| python3-dev | |
| libatomic-ops-dev | |
| autoconf | |
| libgsl-dev | |
| zlib1g-dev | |
| libdeflate-dev | |
| libhts-dev | |
| samtools | |
| libjemalloc-dev | |
| bedtools | |
| cargo | |
| - name: Install wgatools | |
| run: cargo install --git https://github.com/wjwei-handsome/wgatools.git | |
| - name: Install pafcheck | |
| run: cargo install --git https://github.com/ekg/pafcheck.git | |
| - name: Init and update submodules | |
| run: git submodule update --init --recursive | |
| - name: Build wfmash | |
| run: cmake -H. -Bbuild -D CMAKE_BUILD_TYPE=Debug -DWFA_PNG_AND_TSV=ON && cmake --build build -- -j 2 | |
| - name: Run cmake tests | |
| run: | | |
| cd build | |
| ctest --output-on-failure |