roll back yml #21
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: R-CMD-check-month | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| # Job for Ubuntu | |
| R-CMD-check-ubuntu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Cache system dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: /usr/local | |
| key: ${{ runner.os }}-sysdeps-${{ hashFiles('**/DESCRIPTION') }}-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-sysdeps- | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y \ | |
| libudunits2-dev \ | |
| libgdal-dev \ | |
| libgeos-dev \ | |
| libproj-dev \ | |
| texlive \ | |
| texlive-latex-extra \ | |
| texlive-fonts-recommended \ | |
| texlive-fonts-extra \ | |
| texinfo \ | |
| ghostscript | |
| - name: Determine Cache Key | |
| id: cache-key | |
| run: | | |
| echo "CACHE_KEY=renv-$(date +%Y-%m)" >> $GITHUB_ENV | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.R/library | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/DESCRIPTION') }}-${{ env.CACHE_KEY }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install R packages | |
| run: | | |
| R -e 'install.packages("devtools")' | |
| R -e 'install.packages("remotes")' | |
| R -e 'remotes::install_cran(c("terra", "sf", "rgbif", "CoordinateCleaner", "ClusterR", "FNN", "geometry", "cluster", "rnaturalearth", "mclust", "methods"))' | |
| - name: Check package | |
| run: | | |
| R CMD build . | |
| R CMD check *tar.gz | |
| - name: Display installation log on failure | |
| if: failure() | |
| run: cat gbif.range.Rcheck/00install.out | |
| - name: Display check log on failure | |
| if: failure() | |
| run: cat gbif.range.Rcheck/00check.log | |
| - name: Upload check results | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: R-CMD-check-results | |
| path: gbif.range.Rcheck | |
| # name: R-CMD-check-all | |
| # | |
| # on: | |
| # push: | |
| # branches: [main] | |
| # pull_request: | |
| # branches: [main] | |
| # | |
| # jobs: | |
| # # Job for Ubuntu | |
| # R-CMD-check-ubuntu: | |
| # runs-on: ubuntu-latest | |
| # | |
| # steps: | |
| # - name: Checkout repository | |
| # uses: actions/checkout@v2 | |
| # | |
| # - name: Set up R | |
| # uses: r-lib/actions/setup-r@v2 | |
| # | |
| # - name: Install system dependencies | |
| # run: | | |
| # sudo apt-get update | |
| # sudo apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev | |
| # sudo apt-get install -y texlive texlive-latex-extra texlive-fonts-recommended texlive-fonts-extra texinfo ghostscript | |
| # | |
| # - name: Cache R packages | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/.R/library | |
| # key: ${{ runner.os }}-renv-${{ hashFiles('**/DESCRIPTION') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-renv- | |
| # | |
| # - name: Install R packages | |
| # run: | | |
| # R -e 'install.packages("devtools")' | |
| # R -e 'install.packages("remotes")' | |
| # R -e 'remotes::install_cran(c("terra", "sf", "rgbif", "CoordinateCleaner", "ClusterR", "FNN", "geometry", "cluster", "rnaturalearth", "mclust", "methods"))' | |
| # | |
| # - name: Check package | |
| # run: | | |
| # R CMD build . | |
| # R CMD check *tar.gz | |
| # | |
| # - name: Upload check results | |
| # if: always() | |
| # uses: actions/upload-artifact@v2 | |
| # with: | |
| # name: R-CMD-check-results | |
| # path: check/*.Rcheck | |
| # | |
| # # # Job for macOS | |
| # # R-CMD-check-macos: | |
| # # runs-on: macos-latest | |
| # # | |
| # # steps: | |
| # # - name: Checkout repository | |
| # # uses: actions/checkout@v2 | |
| # # | |
| # # - name: Set up R | |
| # # uses: r-lib/actions/setup-r@v2 | |
| # # | |
| # # - name: Install system dependencies | |
| # # run: | | |
| # # brew install udunits gdal geos proj | |
| # # brew install --cask mactex-no-gui | |
| # # | |
| # # - name: Add LaTeX to PATH | |
| # # run: | | |
| # # echo "/Library/TeX/texbin" >> $GITHUB_PATH | |
| # # echo 'eval "$(/usr/libexec/path_helper)"' >> $GITHUB_ENV | |
| # # eval "$(/usr/libexec/path_helper)" | |
| # # | |
| # # - name: Update tlmgr and install LaTeX packages | |
| # # run: | | |
| # # tlmgr update --self | |
| # # tlmgr install inconsolata helvetic times courier | |
| # # | |
| # # - name: Cache R packages | |
| # # uses: actions/cache@v2 | |
| # # with: | |
| # # path: ~/.R/library | |
| # # key: ${{ runner.os }}-renv-${{ hashFiles('**/DESCRIPTION') }} | |
| # # restore-keys: | | |
| # # ${{ runner.os }}-renv- | |
| # # | |
| # # - name: Install R packages | |
| # # run: | | |
| # # R -e 'install.packages("devtools")' | |
| # # R -e 'install.packages("remotes")' | |
| # # R -e 'remotes::install_cran(c("terra", "sf", "rgbif", "CoordinateCleaner", "ClusterR", "FNN", "geometry", "cluster", "rnaturalearth", "mclust", "methods"))' | |
| # # | |
| # # - name: Check package | |
| # # run: | | |
| # # R CMD build . | |
| # # R CMD check *tar.gz | |
| # # | |
| # # - name: Upload check results | |
| # # if: always() | |
| # # uses: actions/upload-artifact@v2 | |
| # # with: | |
| # # name: R-CMD-check-results | |
| # # path: check/*.Rcheck |