Merge pull request #31 from CCRGeneticsBranch/feature/casename

Feature/casename

.pre-commit-config.yaml

@@ -0,0 +1,42 @@
+default_install_hook_types: [pre-commit, commit-msg]
+default_stages: [pre-commit]
+exclude: ^assets/
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v1.2.3
+    hooks:
+      - id: check-added-large-files
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+  # spell check
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.2.4
+    hooks:
+      - id: codespell
+        # https://github.com/codespell-project/codespell/issues/1498
+  # Python formatting
+  - repo: https://github.com/psf/black
+    rev: 23.7.0
+    hooks:
+      - id: black
+  # R formatting
+  - repo: https://github.com/lorenzwalthert/precommit
+    rev: v0.1.2
+    hooks:
+      - id: style-files
+  # general linting
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v2.7.1
+    hooks:
+      - id: prettier
+  # enforce commit format
+  - repo: https://github.com/compilerla/conventional-pre-commit
+    rev: v2.3.0
+    hooks:
+      - id: conventional-pre-commit
+        stages: [commit-msg]
+        args: []
+  - repo: https://github.com/citation-file-format/cffconvert
+    rev: 054bda51dbe278b3e86f27c890e3f3ac877d616c
+    hooks:
+      - id: validate-cff

agc-project.yaml

@@ -13,13 +13,11 @@ contexts:
     nfmvp:
         requestSpotInstances: false
         instanceTypes:
-          - "m5.large"
-          - "c5.9xlarge"
-          - "m5.xlarge"
-          - "m5.12xlarge"
+          - "m5a.large"
+          - "m5a.xlarge"
           - "m6a.8xlarge"
+          - "m5a.4xlarge"
           - "m5a.8xlarge"
-          - "r5.8xlarge"
         engines:
             - type: nextflow
               engine: nextflow