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PD-2474: Remove reads from MT genes in Tagsort metrics #355

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PD-2474: Remove reads from MT genes in Tagsort metrics

PD-2474: Remove reads from MT genes in Tagsort metrics #355

Triggered via pull request February 4, 2024 16:31
@aawdehaawdeh
synchronize #100
aa-mt-tagsort
Status Failure
Total duration 5m 17s
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trivy.yml

on: pull_request
Matrix: DSP AppSec Trivy check
Matrix: DSP AppSec Trivy check
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1 error and 15 warnings
DSP AppSec Trivy check (3rd-party-tools/arrays-picard-private)
Process completed with exit code 1.
DSP AppSec Trivy check (3rd-party-tools/zcall)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/fgbio)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/picard-python)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/samtools-star)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/samtools-picard-bwa)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/arrays-picard-private)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/illumina-iaap-autocall)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/minimac4)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/eagle)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/gatk)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/umi-tools)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/verify-bam-id)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/samtools)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/bcftools-vcftools)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
DSP AppSec Trivy check (3rd-party-tools/dragmap)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.