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wdl-ci.yml
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[CZID-9425] Use AMR docker image for AMR RunSpades (#330) WDL CI #1899: Commit b404d3b pushed by lvreynoso
February 27, 2024 19:09 6m 56s main
main
February 27, 2024 19:09 6m 56s
ref accession WDL CI #1898: Commit 01f969d pushed by morsecodist
February 27, 2024 01:07 7m 25s tmorse-cg-manifest
tmorse-cg-manifest
February 27, 2024 01:07 7m 25s
Update changelog WDL CI #1897: Commit d540362 pushed by lvreynoso
February 26, 2024 23:50 6m 0s lvreynoso/encapsulate_amr
lvreynoso/encapsulate_amr
February 26, 2024 23:50 6m 0s
Use AMR docker image for RunSpades WDL CI #1896: Commit ddb6cdb pushed by lvreynoso
February 26, 2024 23:38 5m 17s lvreynoso/encapsulate_amr
lvreynoso/encapsulate_amr
February 26, 2024 23:38 5m 17s
Add tracking for spades failures (#316) WDL CI #1895: Commit 0d8bb2d pushed by lvreynoso
February 23, 2024 22:01 6m 25s main
main
February 23, 2024 22:01 6m 25s
Update changelog WDL CI #1894: Commit 6c02d9e pushed by lvreynoso
February 23, 2024 22:01 7m 1s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 23, 2024 22:01 7m 1s
Fix missing parameter in function calls WDL CI #1893: Commit d21b89a pushed by lvreynoso
February 23, 2024 17:49 22m 29s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 23, 2024 17:49 22m 29s
Revert release script WDL CI #1892: Commit 8b9248b pushed by lvreynoso
February 23, 2024 01:10 59s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 23, 2024 01:10 59s
Lint WDL CI #1891: Commit 98228d4 pushed by lvreynoso
February 23, 2024 00:29 22m 55s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 23, 2024 00:29 22m 55s
Refactor log script; call script in AMR wdl WDL CI #1890: Commit a14e886 pushed by lvreynoso
February 23, 2024 00:23 1m 10s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 23, 2024 00:23 1m 10s
Migrate the metrics code in consensus_genome_coverage_service.rb to C… WDL CI #1889: Commit 16a9484 pushed by lvreynoso
February 22, 2024 23:17 14m 46s main
main
February 22, 2024 23:17 14m 46s
Merge remote-tracking branch 'origin/main' into lvreynoso/migrate_cg_… WDL CI #1888: Commit 91cd39a pushed by lvreynoso
February 22, 2024 23:01 14m 9s lvreynoso/migrate_cg_service_metrics
lvreynoso/migrate_cg_service_metrics
February 22, 2024 23:01 14m 9s
Pin medaka to version 1.6.1 (#329) WDL CI #1887: Commit 6469f0c pushed by lvreynoso
February 22, 2024 23:00 14m 15s main
main
February 22, 2024 23:00 14m 15s
Pin medaka to version 1.6.1 WDL CI #1886: Commit 4c67da5 pushed by lvreynoso
February 22, 2024 19:36 14m 13s lvreynoso/medaka_1_6_1
lvreynoso/medaka_1_6_1
February 22, 2024 19:36 14m 13s
Remove reinitialization of stats object WDL CI #1885: Commit d0a3ddf pushed by lvreynoso
February 22, 2024 04:14 8m 43s lvreynoso/migrate_cg_service_metrics
lvreynoso/migrate_cg_service_metrics
February 22, 2024 04:14 8m 43s
Move all metrics into existing stats file WDL CI #1884: Commit e4e5188 pushed by lvreynoso
February 22, 2024 03:44 7m 43s lvreynoso/migrate_cg_service_metrics
lvreynoso/migrate_cg_service_metrics
February 22, 2024 03:44 7m 43s
Add translated python to compute coverage depth to ComputeStats WDL CI #1883: Commit f85b449 pushed by lvreynoso
February 22, 2024 03:32 7m 12s lvreynoso/migrate_cg_service_metrics
lvreynoso/migrate_cg_service_metrics
February 22, 2024 03:32 7m 12s
Revert "containment check perf boost (#320)" WDL CI #1882: Commit 18f8d42 pushed by phoenixAja
February 16, 2024 20:28 11m 28s revert-320-tmorse-containment-check
revert-320-tmorse-containment-check
February 16, 2024 20:28 11m 28s
fixes WDL CI #1881: Commit 9934098 pushed by morsecodist
February 15, 2024 22:24 7m 15s tmorse-cg-manifest
tmorse-cg-manifest
February 15, 2024 22:24 7m 15s
fixes WDL CI #1880: Commit c7ad863 pushed by morsecodist
February 15, 2024 22:16 8m 4s tmorse-cg-manifest
tmorse-cg-manifest
February 15, 2024 22:16 8m 4s
revert ncbi-compress WDL CI #1879: Commit c783836 pushed by phoenixAja
February 15, 2024 20:44 11m 46s phoenix/revert-to-12bb2d6
phoenix/revert-to-12bb2d6
February 15, 2024 20:44 11m 46s
Commit script file in lib WDL CI #1878: Commit 57c7553 pushed by lvreynoso
February 15, 2024 00:52 22m 52s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 15, 2024 00:52 22m 52s
Use lib for short-read-mngs; inline script for amr WDL CI #1877: Commit 4c3b4b5 pushed by lvreynoso
February 15, 2024 00:35 1m 50s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 15, 2024 00:35 1m 50s
use ncbidbcmd to download NT and NR if not provided WDL CI #1876: Commit 3d9be6c pushed by phoenixAja
February 14, 2024 17:44 1m 17s phoenix/blastdbcmd
phoenix/blastdbcmd
February 14, 2024 17:44 1m 17s
Separate script back out to python code embedded in WDL; restore tests WDL CI #1875: Commit 0f9749a pushed by lvreynoso
February 12, 2024 19:27 1m 6s lvreynoso/spades_failure_tracking
lvreynoso/spades_failure_tracking
February 12, 2024 19:27 1m 6s