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remove requirements pin WDL CI #2074: Commit e5a158f pushed by rzlim08
June 7, 2024 18:06 1m 12s rlim/minimap2-diamond-mark-intermediate-outputs
rlim/minimap2-diamond-mark-intermediate-outputs
June 7, 2024 18:06 1m 12s
mark intermediate outputs from minmap2 and diamond WDL CI #2073: Commit 6fa2564 pushed by rzlim08
June 7, 2024 17:58 3m 52s rlim/minimap2-diamond-mark-intermediate-outputs
rlim/minimap2-diamond-mark-intermediate-outputs
June 7, 2024 17:58 3m 52s
remove-taxid-fasta-outputs WDL CI #2072: Commit d4f094c pushed by rzlim08
June 7, 2024 17:12 22m 21s rlim/remove-taxid-fasta-outputs
rlim/remove-taxid-fasta-outputs
June 7, 2024 17:12 22m 21s
remove pre-assembly outputs WDL CI #2071: Commit e739cf4 pushed by rzlim08
May 28, 2024 23:18 1m 10s rlim/remove-preassembly-outputs
rlim/remove-preassembly-outputs
May 28, 2024 23:18 1m 10s
check for completed alignment chunks before dispatching them (#360) WDL CI #2070: Commit 82f8a92 pushed by morsecodist
May 28, 2024 19:48 23m 0s main
main
May 28, 2024 19:48 23m 0s
Sort bowtie2 outputs for reproducibility (#365) WDL CI #2069: Commit a19202b pushed by rzlim08
May 24, 2024 16:50 22m 19s main
main
May 24, 2024 16:50 22m 19s
add multithreading to sort WDL CI #2068: Commit 5aacdf9 pushed by rzlim08
May 23, 2024 22:51 20m 44s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 22:51 20m 44s
Bump jinja2 from 3.1.3 to 3.1.4 in /workflows/benchmark (#353) WDL CI #2067: Commit 6ed1fc2 pushed by rzlim08
May 23, 2024 21:57 2m 49s main
main
May 23, 2024 21:57 2m 49s
--- (#363) WDL CI #2066: Commit 57529d6 pushed by rzlim08
May 23, 2024 21:57 52s main
main
May 23, 2024 21:57 52s
linting WDL CI #2065: Commit 1879135 pushed by rzlim08
May 23, 2024 21:35 22m 57s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:35 22m 57s
sort bowtie2 outputs for reproducibility WDL CI #2064: Commit 1bb6a26 pushed by rzlim08
May 23, 2024 21:32 1m 14s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:32 1m 14s
Update Changelogs (#364) WDL CI #2063: Commit 29224db pushed by lvreynoso
May 21, 2024 23:30 15m 30s main
main
May 21, 2024 23:30 15m 30s
Update short-read-mngs changelog WDL CI #2062: Commit 021175d pushed by lvreynoso
May 21, 2024 23:27 53s lvreynoso/update_readmes
lvreynoso/update_readmes
May 21, 2024 23:27 53s
WDL CI #2061: Commit c35ed87 pushed by dependabot bot
May 21, 2024 23:18 1m 5s dependabot/pip/requests-2.32.2
dependabot/pip/requests-2.32.2
May 21, 2024 23:18 1m 5s
Pin requests to 2.31.0 (#362) WDL CI #2060: Commit eb1e2b6 pushed by lvreynoso
May 21, 2024 23:17 12m 51s main
main
May 21, 2024 23:17 12m 51s
Pin requests version in dev requirements WDL CI #2059: Commit 293d289 pushed by lvreynoso
May 21, 2024 23:00 58s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 23:00 58s
Change pinned version for short-read-mngs, which is stuck in python 3.6 WDL CI #2058: Commit dfd02b2 pushed by lvreynoso
May 21, 2024 22:39 11m 6s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:39 11m 6s
Pin requests to 2.31.0 WDL CI #2057: Commit ae10711 pushed by lvreynoso
May 21, 2024 22:36 2m 34s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:36 2m 34s
Add sensitivity flag to DIAMOND in ONT/long-read workflow (#350) WDL CI #2056: Commit dc1d276 pushed by lvreynoso
May 21, 2024 18:46 7m 31s main
main
May 21, 2024 18:46 7m 31s
WDL CI #2055: Commit 43685de pushed by dependabot bot
May 21, 2024 05:43 4m 11s dependabot/pip/workflows/amr/requests-2.32.0
dependabot/pip/workflows/amr/requests-2.32.0
May 21, 2024 05:43 4m 11s
comments and s3 retries WDL CI #2054: Commit cdfa51c pushed by morsecodist
May 21, 2024 00:56 7m 42s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 21, 2024 00:56 7m 42s
check for completed alignment chunks before dispatching them WDL CI #2053: Commit 8e0524d pushed by morsecodist
May 20, 2024 19:58 7m 14s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 20, 2024 19:58 7m 14s
Output spades log in RunSpades (#359) WDL CI #2052: Commit d70379d pushed by lvreynoso
May 13, 2024 20:21 5m 57s main
main
May 13, 2024 20:21 5m 57s
Output spades log in RunSpades WDL CI #2051: Commit eec4665 pushed by lvreynoso
May 13, 2024 18:40 6m 41s lvreynoso/amr_emit_spades_log
lvreynoso/amr_emit_spades_log
May 13, 2024 18:40 6m 41s
Revert test release WDL CI #2050: Commit d2065df pushed by lvreynoso
May 11, 2024 22:53 1m 13s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 11, 2024 22:53 1m 13s