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short-read-mngs-viral-benchmarks.yml
299 workflow run results
299 workflow run results

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remove requirements pin short-read-mngs viral benchmarks #2043: Commit e5a158f pushed by rzlim08
June 7, 2024 18:06 18s rlim/minimap2-diamond-mark-intermediate-outputs
rlim/minimap2-diamond-mark-intermediate-outputs
June 7, 2024 18:06 18s
mark intermediate outputs from minmap2 and diamond short-read-mngs viral benchmarks #2042: Commit 6fa2564 pushed by rzlim08
June 7, 2024 17:58 8m 9s rlim/minimap2-diamond-mark-intermediate-outputs
rlim/minimap2-diamond-mark-intermediate-outputs
June 7, 2024 17:58 8m 9s
remove-taxid-fasta-outputs short-read-mngs viral benchmarks #2041: Commit d4f094c pushed by rzlim08
June 7, 2024 17:12 20m 22s rlim/remove-taxid-fasta-outputs
rlim/remove-taxid-fasta-outputs
June 7, 2024 17:12 20m 22s
remove pre-assembly outputs short-read-mngs viral benchmarks #2040: Commit e739cf4 pushed by rzlim08
May 28, 2024 23:18 10m 3s rlim/remove-preassembly-outputs
rlim/remove-preassembly-outputs
May 28, 2024 23:18 10m 3s
check for completed alignment chunks before dispatching them (#360) short-read-mngs viral benchmarks #2039: Commit 82f8a92 pushed by morsecodist
May 28, 2024 19:48 13s main
main
May 28, 2024 19:48 13s
Sort bowtie2 outputs for reproducibility (#365) short-read-mngs viral benchmarks #2038: Commit a19202b pushed by rzlim08
May 24, 2024 16:50 20m 5s main
main
May 24, 2024 16:50 20m 5s
add multithreading to sort short-read-mngs viral benchmarks #2037: Commit 5aacdf9 pushed by rzlim08
May 23, 2024 22:51 19m 34s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 22:51 19m 34s
Bump jinja2 from 3.1.3 to 3.1.4 in /workflows/benchmark (#353) short-read-mngs viral benchmarks #2036: Commit 6ed1fc2 pushed by rzlim08
May 23, 2024 21:57 16s main
main
May 23, 2024 21:57 16s
--- (#363) short-read-mngs viral benchmarks #2035: Commit 57529d6 pushed by rzlim08
May 23, 2024 21:57 17s main
main
May 23, 2024 21:57 17s
linting short-read-mngs viral benchmarks #2034: Commit 1879135 pushed by rzlim08
May 23, 2024 21:35 14s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:35 14s
sort bowtie2 outputs for reproducibility short-read-mngs viral benchmarks #2033: Commit 1bb6a26 pushed by rzlim08
May 23, 2024 21:32 3m 8s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:32 3m 8s
Update Changelogs (#364) short-read-mngs viral benchmarks #2032: Commit 29224db pushed by lvreynoso
May 21, 2024 23:30 15s main
main
May 21, 2024 23:30 15s
Update short-read-mngs changelog short-read-mngs viral benchmarks #2031: Commit 021175d pushed by lvreynoso
May 21, 2024 23:27 13s lvreynoso/update_readmes
lvreynoso/update_readmes
May 21, 2024 23:27 13s
short-read-mngs viral benchmarks #2030: Commit c35ed87 pushed by dependabot bot
May 21, 2024 23:18 16s dependabot/pip/requests-2.32.2
dependabot/pip/requests-2.32.2
May 21, 2024 23:18 16s
Pin requests to 2.31.0 (#362) short-read-mngs viral benchmarks #2029: Commit eb1e2b6 pushed by lvreynoso
May 21, 2024 23:17 12m 53s main
main
May 21, 2024 23:17 12m 53s
Pin requests version in dev requirements short-read-mngs viral benchmarks #2028: Commit 293d289 pushed by lvreynoso
May 21, 2024 23:00 19s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 23:00 19s
Change pinned version for short-read-mngs, which is stuck in python 3.6 short-read-mngs viral benchmarks #2027: Commit dfd02b2 pushed by lvreynoso
May 21, 2024 22:39 9m 46s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:39 9m 46s
Pin requests to 2.31.0 short-read-mngs viral benchmarks #2026: Commit ae10711 pushed by lvreynoso
May 21, 2024 22:36 2m 13s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:36 2m 13s
Add sensitivity flag to DIAMOND in ONT/long-read workflow (#350) short-read-mngs viral benchmarks #2025: Commit dc1d276 pushed by lvreynoso
May 21, 2024 18:46 9m 51s main
main
May 21, 2024 18:46 9m 51s
short-read-mngs viral benchmarks #2024: Commit 43685de pushed by dependabot bot
May 21, 2024 05:43 13s dependabot/pip/workflows/amr/requests-2.32.0
dependabot/pip/workflows/amr/requests-2.32.0
May 21, 2024 05:43 13s
comments and s3 retries short-read-mngs viral benchmarks #2023: Commit cdfa51c pushed by morsecodist
May 21, 2024 00:56 18s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 21, 2024 00:56 18s
check for completed alignment chunks before dispatching them short-read-mngs viral benchmarks #2022: Commit 8e0524d pushed by morsecodist
May 20, 2024 19:58 15s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 20, 2024 19:58 15s
Output spades log in RunSpades (#359) short-read-mngs viral benchmarks #2021: Commit d70379d pushed by lvreynoso
May 13, 2024 20:21 17s main
main
May 13, 2024 20:21 17s
Output spades log in RunSpades short-read-mngs viral benchmarks #2020: Commit eec4665 pushed by lvreynoso
May 13, 2024 18:40 15s lvreynoso/amr_emit_spades_log
lvreynoso/amr_emit_spades_log
May 13, 2024 18:40 15s
Revert test release short-read-mngs viral benchmarks #2019: Commit d2065df pushed by lvreynoso
May 11, 2024 22:53 12s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 11, 2024 22:53 12s