Skip to content

sim-fish 0.1
Compare
Choose a tag to compare
@Henley13 Henley13 released this 21 Feb 15:35
· 10 commits to main since this release
0.1
a3f0852
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

Version 0.1.0:

Major upgrades
Add a probability_map parameter in simfish.simulate_ground_truth to bias the sampling of spots (fd76e9f).
Remove subpackage, add unit tests and refactor modules to match latest big-fish versions (b368cd8, d149c05, efec9ba, c3a03fd, 8f03a5e, 3195335, f148e84, feafad2, 9324a3b, 875f6da, b4705e3, dfcab8a).
Add online documentation (e0188ba, d2cf462, b620ab9, 9d6506f, 1023d43, 305e020, 4de333b).
Remove the noise subtraction from amplitude (1a1bbee)
Add functions to build template cells from a bank of cell instances (beb4b18).
Add function to simulate localization patterns (f640bc2, 5f0a7dc, 5015113).
Add a loader function for the template data (d223e22).

Minor upgrades
Unpin requirements (161abb2).
Update requirements.txt file (e9000ce, de8ac5a).
Update setup.py file (ab68057, 2e12dd9).
Update readme file (f3aeece, 4752b7f, 2e21210).
Add bash scripts to build the package (06aae59).
Update .gitignore file (d4809a8, 5d83b8a)
Add several config files for code coverage, CI and documentation (886964e).

Bug fixes
Fix bug during cluster simulation (da5c303).
Fix bug to sample spot coordinates at the edge of the frame (154017a).
Fix bug with negative values in background noise (8b608f9).

Assets 2
Loading