Update annotate-nf-processed-data.Rmd

Minor change to make vignette clearer
nf-osi · Jan 31, 2025 · 192cd6f · 192cd6f
1 parent 0fbb68b
commit 192cd6f
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/vignettes/annotate-nf-processed-data.Rmd b/vignettes/annotate-nf-processed-data.Rmd
@@ -263,6 +263,8 @@ wf_link <- c(FreeBayes = "https://nf-co.re/sarek/3.2.3/output#freebayes",
              Mutect2 = "https://nf-co.re/sarek/3.2.3/output#gatk-mutect2",
              Strelka2 = "https://nf-co.re/sarek/3.2.3/output#strelka2")
 
+sample_io <- sarek_meta$sample_io
+
 add_activity_batch(sample_io$output_id, 
                    sample_io$workflow, 
                    wf_link[sample_io$workflow],