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    26 repositories

    • BioLLM

      Public
      Jupyter Notebook
      •
      MIT License
      •3•18•1•0•Updated Feb 27, 2025Feb 27, 2025

    • RegFormer

      Public
      Python
      •2•5•2•0•Updated Jan 7, 2025Jan 7, 2025

    • DNBSRN

      Public
      A deep learning model for improving the image resolution of ultra-high-density arrays in DNBSEQ.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • BatchEval

      Public
      A toolkit of batch effects checking
      Python
      •
      MIT License
      •0•4•0•0•Updated Sep 5, 2023Sep 5, 2023

    • saw_tools

      Public
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 6, 2023Jul 6, 2023

    • geftools

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Jul 6, 2023Jul 6, 2023

    • saw_count_p

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 6, 2023Jul 6, 2023

    • gefpy

      Public
      Cython
      •0•0•0•0•Updated Jun 12, 2023Jun 12, 2023

    • saw_tissueCut_p

      Public
      Python
      •0•0•1•0•Updated May 26, 2023May 26, 2023

    • saw_splitMask

      Public
      C++
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_spatilCluster

      Public
      Python
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_saturation_p

      Public
      C++
      •
      MIT License
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_report_p

      Public
      Python
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_merge_p

      Public
      C++
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_bcStar

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • saw_cidcount_p

      Public
      C++
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • handleBam

      Public archive
      C++
      •2•2•0•0•Updated Apr 27, 2023Apr 27, 2023

    • EAGS

      Public
      EAGS is a Gaussian smoothing method based on adaptive weight calculation for processing large-scale spatial transcriptome data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • imageQC

      Public
      2•3•1•0•Updated Oct 1, 2022Oct 1, 2022

    • ST_Toolkit

      Public
      tools to handle spatial transcriptome data
      Python
      •
      MIT License
      •3•9•2•0•Updated Jan 21, 2022Jan 21, 2022

    • StereomicsSpark

      Public
      mapping barcode to stereo_chip
      Java
      •0•0•0•0•Updated Jun 2, 2021Jun 2, 2021

    • stereopy_data

      Public
      Test data of stereopy
      MIT License
      •3•0•0•0•Updated Jun 1, 2021Jun 1, 2021

    • st_toolkits

      Public
      0•0•0•0•Updated Mar 11, 2021Mar 11, 2021

    • Stereo-seq

      Public
      C++
      •0•8•1•0•Updated Feb 11, 2021Feb 11, 2021

    • SOAPNuke

      Public
      A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2021Jan 25, 2021

    • SeqArc

      Public
      integrated fastq file compressor
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2021Jan 25, 2021