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Version 1.4.0
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@stschiff stschiff released this 09 Sep 10:07
· 123 commits to master since this release
v1.4.0
f908aad

A substantially new release that includes an option to handle single-stranded library prep data in pileupCaller.

Key updates:

  • Lots of internal refactoring and addition of automatic tests.
  • Different handling of triallelic sites by default. You can restore the old behaviour using --keepIncongruentReads
  • Removed some dangerous options, such as running without a SNP file.
  • Added option to handle single-stranded library prep (using --singleStrandMode).
  • Outputting some basic statistics per sample
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